I’ve got the 11" Pro and was also experiencing a lot of crackling in most music apps including Audulus. iOS 12.1.2 beta 1 has fixed the problem though, I’ve installed it a couple of days ago and haven’t heard a crackle since. This fix is also specifically mentioned in the release notes of 12.1.2 beta 1.
Apparently it had something to do with Core Audio utilizing the energy-efficient cores of the A12X instead of the high-performance ones, not completely sure though.
I think the public beta is out now, so you could install that (it works fine for me), or wait until the final release.